filter_transform.cpp File Reference

#include "genesis/population/functions/filter_transform.hpp"
#include <cassert>
#include <iostream>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
bool	filter_by_status (std::function< bool(BaseCountsStatus const &)> predicate, Variant const &variant, SampleFilterType type, size_t min_coverage=0, size_t max_coverage=0, size_t min_count=0, bool tolerate_deletions=false)
	Filter a Variant based on a predicate that is applied to the result of a status() call on the BaseCounts of the variant. More...
void	transform_zero_out_by_max_count (BaseCounts &sample, size_t max_count)
	Transform a BaseCounts sample by setting any nucleotide count (A, C, G, T) to zero if max_count is exceeded for that nucleotide. More...
void	transform_zero_out_by_max_count (Variant &variant, size_t max_count)
	Transform a variant by setting any nucleotide count (A, C, G, T) of its samples to zero if max_count is exceeded for that nucleotide. More...
void	transform_zero_out_by_min_count (BaseCounts &sample, size_t min_count)
	Transform a BaseCounts sample by setting any nucleotide count (A, C, G, T) to zero if min_count is not reached for that nucleotide. More...
void	transform_zero_out_by_min_count (Variant &variant, size_t min_count)
	Transform a variant by setting any nucleotide count (A, C, G, T) of its samples to zero if min_count is not reached for that nucleotide. More...
void	transform_zero_out_by_min_max_count (BaseCounts &sample, size_t min_count, size_t max_count)
	Transform a BaseCounts sample by setting any nucleotide count (A, C, G, T) to zero if min_count is not reached or if max_count is exceeded for that nucleotide. More...
void	transform_zero_out_by_min_max_count (Variant &variant, size_t min_count, size_t max_count)
	Transform a variant by setting any nucleotide count (A, C, G, T) of its samples to zero if min_count is not reached or if max_count is exceeded for that nucleotide. More...