afs_estimate.cpp File Reference

#include "genesis/population/functions/afs_estimate.hpp"
#include "genesis/sequence/functions/quality.hpp"
#include <cassert>
#include <cmath>
#include <cstdint>
#include <numeric>
#include <stdexcept>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
AfsPileupRecord	convert_to_afs_pileup_record (SimplePileupReader::Record const &record)
std::vector< double >	prob_cond_true_freq (size_t n, std::vector< bool > const &alleles, std::vector< unsigned char > const &phred_scores, bool unfolded)
std::vector< double >	prob_cond_true_freq_unfolded (size_t n, std::vector< bool > const &alleles, std::vector< unsigned char > const &phred_scores, bool invert_alleles)