| add_attribute(std::string const &key, Target target) | KeyedAttributeTreeNewickReaderPlugin | |
| add_attribute(std::string const &source_key, Target target, std::string const &target_key) | KeyedAttributeTreeNewickReaderPlugin | |
| add_attribute(std::string const &source_key, Target target, std::string const &target_key, std::string const &default_value) | KeyedAttributeTreeNewickReaderPlugin | |
| add_catch_all(Target target=Target::kNode) | KeyedAttributeTreeNewickReaderPlugin | |
| add_nhx_attributes() | KeyedAttributeTreeNewickReaderPlugin | |
| assigner(std::string const &value) | KeyedAttributeTreeNewickReaderPlugin | inline |
| assigner() const | KeyedAttributeTreeNewickReaderPlugin | inline |
| broker_to_tree(NewickBroker const &broker) const | NewickReader | |
| broker_to_tree_destructive(NewickBroker &broker) const | NewickReader | |
| clear() | KeyedAttributeTreeNewickReaderPlugin | |
| CommonTreeNewickReaderPlugin()=default | CommonTreeNewickReaderPlugin | |
| CommonTreeNewickReaderPlugin(CommonTreeNewickReaderPlugin const &)=default | CommonTreeNewickReaderPlugin | |
| CommonTreeNewickReaderPlugin(CommonTreeNewickReaderPlugin &&)=default | CommonTreeNewickReaderPlugin | |
| create_edge_data_function typedef | NewickReader | |
| create_edge_data_plugin | NewickReader | |
| create_node_data_function typedef | NewickReader | |
| create_node_data_plugin | NewickReader | |
| default_branch_length() const | CommonTreeNewickReaderPlugin | inline |
| default_branch_length(double value) | CommonTreeNewickReaderPlugin | inline |
| default_inner_name() const | CommonTreeNewickReaderPlugin | inline |
| default_inner_name(std::string const &value) | CommonTreeNewickReaderPlugin | inline |
| default_leaf_name() const | CommonTreeNewickReaderPlugin | inline |
| default_leaf_name(std::string const &value) | CommonTreeNewickReaderPlugin | inline |
| default_root_name() const | CommonTreeNewickReaderPlugin | inline |
| default_root_name(std::string const &value) | CommonTreeNewickReaderPlugin | inline |
| genesis::element_to_edge(NewickBrokerElement const &element, TreeEdge &edge) const | CommonTreeNewickReaderPlugin | inline |
| genesis::tree::KeyedAttributeTreeNewickReaderPlugin::element_to_edge(NewickBrokerElement const &element, TreeEdge &edge) const | KeyedAttributeTreeNewickReaderPlugin | |
| element_to_edge_function typedef | NewickReader | |
| element_to_edge_plugins | NewickReader | |
| genesis::element_to_node(NewickBrokerElement const &element, TreeNode &node) const | CommonTreeNewickReaderPlugin | inline |
| genesis::tree::KeyedAttributeTreeNewickReaderPlugin::element_to_node(NewickBrokerElement const &element, TreeNode &node) const | KeyedAttributeTreeNewickReaderPlugin | |
| element_to_node_function typedef | NewickReader | |
| element_to_node_plugins | NewickReader | |
| enable_tags(bool value) | NewickReader | |
| enable_tags() const | NewickReader | |
| finish_reading_function typedef | NewickReader | |
| finish_reading_plugins | NewickReader | |
| KeyedAttributeTreeNewickReader() | KeyedAttributeTreeNewickReader | inline |
| KeyedAttributeTreeNewickReaderPlugin()=default | KeyedAttributeTreeNewickReaderPlugin | |
| KeyedAttributeTreeNewickReaderPlugin(KeyedAttributeTreeNewickReaderPlugin const &)=default | KeyedAttributeTreeNewickReaderPlugin | |
| KeyedAttributeTreeNewickReaderPlugin(KeyedAttributeTreeNewickReaderPlugin &&)=default | KeyedAttributeTreeNewickReaderPlugin | |
| NewickReader()=default | NewickReader | |
| NewickReader(NewickReader const &)=default | NewickReader | |
| NewickReader(NewickReader &&)=default | NewickReader | |
| genesis::operator=(NewickReader const &)=default | NewickReader | |
| genesis::operator=(NewickReader &&)=default | NewickReader | |
| genesis::tree::CommonTreeNewickReaderPlugin::operator=(CommonTreeNewickReaderPlugin const &)=default | CommonTreeNewickReaderPlugin | |
| genesis::tree::CommonTreeNewickReaderPlugin::operator=(CommonTreeNewickReaderPlugin &&)=default | CommonTreeNewickReaderPlugin | |
| genesis::tree::KeyedAttributeTreeNewickReaderPlugin::operator=(KeyedAttributeTreeNewickReaderPlugin const &)=default | KeyedAttributeTreeNewickReaderPlugin | |
| genesis::tree::KeyedAttributeTreeNewickReaderPlugin::operator=(KeyedAttributeTreeNewickReaderPlugin &&)=default | KeyedAttributeTreeNewickReaderPlugin | |
| parse_multiple_trees(utils::InputStream &input_stream, TreeSet &tree_set, std::string const &default_name) const | NewickReader | |
| parse_named_tree(utils::InputStream &input_stream) const | NewickReader | |
| parse_single_tree(utils::InputStream &input_stream) const | NewickReader | |
| prefix(std::string const &value) | KeyedAttributeTreeNewickReaderPlugin | inline |
| prefix() const | KeyedAttributeTreeNewickReaderPlugin | inline |
| prepare_reading_function typedef | NewickReader | |
| prepare_reading_plugins | NewickReader | |
| read(std::shared_ptr< utils::BaseInputSource > source) const | NewickReader | |
| read(std::shared_ptr< utils::BaseInputSource > source, TreeSet &target, std::string const &default_name="") const | NewickReader | |
| read(std::vector< std::shared_ptr< utils::BaseInputSource >> sources, TreeSet &target, std::string const &default_name="") const | NewickReader | |
| read(std::vector< std::shared_ptr< utils::BaseInputSource >> sources, std::string const &default_name="") const | NewickReader | |
| genesis::register_with(NewickReader &reader) const | CommonTreeNewickReaderPlugin | inline |
| genesis::tree::KeyedAttributeTreeNewickReaderPlugin::register_with(NewickReader &reader) const | KeyedAttributeTreeNewickReaderPlugin | |
| replace_name_underscores() const | CommonTreeNewickReaderPlugin | inline |
| replace_name_underscores(bool value) | CommonTreeNewickReaderPlugin | inline |
| genesis::self_type typedef | CommonTreeNewickReaderPlugin | |
| genesis::tree::KeyedAttributeTreeNewickReaderPlugin::self_type typedef | KeyedAttributeTreeNewickReaderPlugin | |
| separator(std::string const &value) | KeyedAttributeTreeNewickReaderPlugin | inline |
| separator() const | KeyedAttributeTreeNewickReaderPlugin | inline |
| set_default_names(std::string const &value) | CommonTreeNewickReaderPlugin | inline |
| set_delimiters(std::string const &prefix, std::string const &separator, std::string const &assigner="=") | KeyedAttributeTreeNewickReaderPlugin | inline |
| set_nhx_delimiters() | KeyedAttributeTreeNewickReaderPlugin | |
| stop_after_semicolon(bool value) | NewickReader | |
| stop_after_semicolon() const | NewickReader | |
| Target enum name | KeyedAttributeTreeNewickReaderPlugin | |
| trim(bool value) | KeyedAttributeTreeNewickReaderPlugin | inline |
| trim() const | KeyedAttributeTreeNewickReaderPlugin | inline |
| use_default_names() const | CommonTreeNewickReaderPlugin | inline |
| use_default_names(bool value) | CommonTreeNewickReaderPlugin | inline |
| ~CommonTreeNewickReaderPlugin()=default | CommonTreeNewickReaderPlugin | virtual |
| ~KeyedAttributeTreeNewickReaderPlugin()=default | KeyedAttributeTreeNewickReaderPlugin | virtual |
| ~NewickReader()=default | NewickReader | virtual |
1.8.17