IndexedAttributeTreeNewickReader Member List

This is the complete list of members for IndexedAttributeTreeNewickReader, including all inherited members.

add_attribute(Source source, size_t index, Target target, std::string const &target_key)	IndexedAttributeTreeNewickReaderPlugin
add_attribute(Source source, size_t index, Target target, std::string const &target_key, std::string const &default_value)	IndexedAttributeTreeNewickReaderPlugin
add_catch_all(Source source, Target target, std::string const &target_key_prefix)	IndexedAttributeTreeNewickReaderPlugin
add_catch_all(Target target=Target::kNode)	IndexedAttributeTreeNewickReaderPlugin
broker_to_tree(NewickBroker const &broker) const	NewickReader
broker_to_tree_destructive(NewickBroker &broker) const	NewickReader
clear()	IndexedAttributeTreeNewickReaderPlugin
CommonTreeNewickReaderPlugin()=default	CommonTreeNewickReaderPlugin
CommonTreeNewickReaderPlugin(CommonTreeNewickReaderPlugin const &)=default	CommonTreeNewickReaderPlugin
CommonTreeNewickReaderPlugin(CommonTreeNewickReaderPlugin &&)=default	CommonTreeNewickReaderPlugin
create_edge_data_function typedef	NewickReader
create_edge_data_plugin	NewickReader
create_node_data_function typedef	NewickReader
create_node_data_plugin	NewickReader
default_branch_length() const	CommonTreeNewickReaderPlugin	inline
default_branch_length(double value)	CommonTreeNewickReaderPlugin	inline
default_inner_name() const	CommonTreeNewickReaderPlugin	inline
default_inner_name(std::string const &value)	CommonTreeNewickReaderPlugin	inline
default_leaf_name() const	CommonTreeNewickReaderPlugin	inline
default_leaf_name(std::string const &value)	CommonTreeNewickReaderPlugin	inline
default_root_name() const	CommonTreeNewickReaderPlugin	inline
default_root_name(std::string const &value)	CommonTreeNewickReaderPlugin	inline
genesis::element_to_edge(NewickBrokerElement const &element, TreeEdge &edge) const	CommonTreeNewickReaderPlugin	inline
genesis::tree::IndexedAttributeTreeNewickReaderPlugin::element_to_edge(NewickBrokerElement const &element, TreeEdge &edge) const	IndexedAttributeTreeNewickReaderPlugin
element_to_edge_function typedef	NewickReader
element_to_edge_plugins	NewickReader
genesis::element_to_node(NewickBrokerElement const &element, TreeNode &node) const	CommonTreeNewickReaderPlugin	inline
genesis::tree::IndexedAttributeTreeNewickReaderPlugin::element_to_node(NewickBrokerElement const &element, TreeNode &node) const	IndexedAttributeTreeNewickReaderPlugin
element_to_node_function typedef	NewickReader
element_to_node_plugins	NewickReader
enable_tags(bool value)	NewickReader
enable_tags() const	NewickReader
finish_reading_function typedef	NewickReader
finish_reading_plugins	NewickReader
IndexedAttributeTreeNewickReader()	IndexedAttributeTreeNewickReader	inline
IndexedAttributeTreeNewickReaderPlugin()=default	IndexedAttributeTreeNewickReaderPlugin
IndexedAttributeTreeNewickReaderPlugin(IndexedAttributeTreeNewickReaderPlugin const &)=default	IndexedAttributeTreeNewickReaderPlugin
IndexedAttributeTreeNewickReaderPlugin(IndexedAttributeTreeNewickReaderPlugin &&)=default	IndexedAttributeTreeNewickReaderPlugin
NewickReader()=default	NewickReader
NewickReader(NewickReader const &)=default	NewickReader
NewickReader(NewickReader &&)=default	NewickReader
genesis::operator=(NewickReader const &)=default	NewickReader
genesis::operator=(NewickReader &&)=default	NewickReader
genesis::tree::CommonTreeNewickReaderPlugin::operator=(CommonTreeNewickReaderPlugin const &)=default	CommonTreeNewickReaderPlugin
genesis::tree::CommonTreeNewickReaderPlugin::operator=(CommonTreeNewickReaderPlugin &&)=default	CommonTreeNewickReaderPlugin
genesis::tree::IndexedAttributeTreeNewickReaderPlugin::operator=(IndexedAttributeTreeNewickReaderPlugin const &)=default	IndexedAttributeTreeNewickReaderPlugin
genesis::tree::IndexedAttributeTreeNewickReaderPlugin::operator=(IndexedAttributeTreeNewickReaderPlugin &&)=default	IndexedAttributeTreeNewickReaderPlugin
parse_multiple_trees(utils::InputStream &input_stream, TreeSet &tree_set, std::string const &default_name) const	NewickReader
parse_named_tree(utils::InputStream &input_stream) const	NewickReader
parse_single_tree(utils::InputStream &input_stream) const	NewickReader
prepare_reading_function typedef	NewickReader
prepare_reading_plugins	NewickReader
read(std::shared_ptr< utils::BaseInputSource > source) const	NewickReader
read(std::shared_ptr< utils::BaseInputSource > source, TreeSet &target, std::string const &default_name="") const	NewickReader
read(std::vector< std::shared_ptr< utils::BaseInputSource >> sources, TreeSet &target, std::string const &default_name="") const	NewickReader
read(std::vector< std::shared_ptr< utils::BaseInputSource >> sources, std::string const &default_name="") const	NewickReader
genesis::register_with(NewickReader &reader) const	CommonTreeNewickReaderPlugin	inline
genesis::tree::IndexedAttributeTreeNewickReaderPlugin::register_with(NewickReader &reader) const	IndexedAttributeTreeNewickReaderPlugin
replace_name_underscores() const	CommonTreeNewickReaderPlugin	inline
replace_name_underscores(bool value)	CommonTreeNewickReaderPlugin	inline
genesis::self_type typedef	CommonTreeNewickReaderPlugin
genesis::tree::IndexedAttributeTreeNewickReaderPlugin::self_type typedef	IndexedAttributeTreeNewickReaderPlugin
set_default_names(std::string const &value)	CommonTreeNewickReaderPlugin	inline
Source enum name	IndexedAttributeTreeNewickReaderPlugin
stop_after_semicolon(bool value)	NewickReader
stop_after_semicolon() const	NewickReader
Target enum name	IndexedAttributeTreeNewickReaderPlugin
use_default_names() const	CommonTreeNewickReaderPlugin	inline
use_default_names(bool value)	CommonTreeNewickReaderPlugin	inline
~CommonTreeNewickReaderPlugin()=default	CommonTreeNewickReaderPlugin	virtual
~IndexedAttributeTreeNewickReaderPlugin()=default	IndexedAttributeTreeNewickReaderPlugin	virtual
~NewickReader()=default	NewickReader	virtual