A library for working with phylogenetic and population genetic data.
v0.32.0
FstPoolCalculatorUnbiased Member List

This is the complete list of members for FstPoolCalculatorUnbiased, including all inherited members.

BaseFstPoolCalculator()=defaultBaseFstPoolCalculator
BaseFstPoolCalculator(BaseFstPoolCalculator const &)=defaultBaseFstPoolCalculator
BaseFstPoolCalculator(BaseFstPoolCalculator &&)=defaultBaseFstPoolCalculator
Estimator enum nameFstPoolCalculatorUnbiased
FstPoolCalculatorUnbiased(size_t smp1_poolsize, size_t smp2_poolsize, WindowAveragePolicy window_average_policy, Estimator est=Estimator::kNei)FstPoolCalculatorUnbiasedinline
FstPoolCalculatorUnbiased(FstPoolCalculatorUnbiased const &)=defaultFstPoolCalculatorUnbiased
FstPoolCalculatorUnbiased(FstPoolCalculatorUnbiased &&)=defaultFstPoolCalculatorUnbiased
get_filter_stats() constBaseFstPoolCalculatorinline
get_pi_between(BaseWindow< D > const &window, std::shared_ptr< GenomeLocusSet > provided_loci, VariantFilterStats const &variant_filter_stats) constFstPoolCalculatorUnbiasedinline
get_pi_between() constFstPoolCalculatorUnbiasedinline
get_pi_total(double pi_within, double pi_between) constFstPoolCalculatorUnbiasedinline
get_pi_total(BaseWindow< D > const &window, std::shared_ptr< GenomeLocusSet > provided_loci, VariantFilterStats const &variant_filter_stats) constFstPoolCalculatorUnbiasedinline
get_pi_total() constFstPoolCalculatorUnbiasedinline
get_pi_values(BaseWindow< D > const &window, std::shared_ptr< GenomeLocusSet > provided_loci, VariantFilterStats const &variant_filter_stats) constFstPoolCalculatorUnbiasedinline
get_pi_values() constFstPoolCalculatorUnbiasedinline
get_pi_within(BaseWindow< D > const &window, std::shared_ptr< GenomeLocusSet > provided_loci, VariantFilterStats const &variant_filter_stats) constFstPoolCalculatorUnbiasedinline
get_pi_within() constFstPoolCalculatorUnbiasedinline
get_result(BaseWindow< D > const &window, std::shared_ptr< GenomeLocusSet > provided_loci, VariantFilterStats const &variant_filter_stats) constFstPoolCalculatorUnbiasedinline
genesis::population::BaseFstPoolCalculator::get_result() constBaseFstPoolCalculatorinline
get_result_pair(BaseWindow< D > const &window, std::shared_ptr< GenomeLocusSet > provided_loci, VariantFilterStats const &variant_filter_stats) constFstPoolCalculatorUnbiasedinline
get_result_pair() constFstPoolCalculatorUnbiasedinline
get_window_average_policy() constFstPoolCalculatorUnbiasedinline
operator=(FstPoolCalculatorUnbiased const &)=defaultFstPoolCalculatorUnbiased
operator=(FstPoolCalculatorUnbiased &&)=defaultFstPoolCalculatorUnbiased
genesis::population::BaseFstPoolCalculator::operator=(BaseFstPoolCalculator const &)=defaultBaseFstPoolCalculator
genesis::population::BaseFstPoolCalculator::operator=(BaseFstPoolCalculator &&)=defaultBaseFstPoolCalculator
process(SampleCounts const &p1, SampleCounts const &p2)BaseFstPoolCalculatorinline
reset()BaseFstPoolCalculatorinline
~BaseFstPoolCalculator()=defaultBaseFstPoolCalculatorvirtual
~FstPoolCalculatorUnbiased() override=defaultFstPoolCalculatorUnbiasedvirtual