A library for working with phylogenetic and population genetic data.
v0.27.0
sync_common.hpp
Go to the documentation of this file.
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#ifndef GENESIS_POPULATION_FORMATS_SYNC_COMMON_H_
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#define GENESIS_POPULATION_FORMATS_SYNC_COMMON_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2022 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lczech@carnegiescience.edu>
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Department of Plant Biology, Carnegie Institution For Science
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260 Panama Street, Stanford, CA 94305, USA
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*/
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#include "
genesis/population/formats/sync_reader.hpp
"
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#include <string>
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#include <vector>
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namespace
genesis
{
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namespace
population {
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// =================================================================================================
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// PoPoolation2 Synchronized File Helper Functions
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// =================================================================================================
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std::ostream&
to_sync
( BaseCounts
const
& bs, std::ostream& os );
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std::ostream&
to_sync
( Variant
const
& var, std::ostream& os );
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}
// namespace population
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}
// namespace genesis
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#endif // include guard
sync_reader.hpp
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::population::to_sync
std::ostream & to_sync(BaseCounts const &bs, std::ostream &os)
Output a BaseCounts instance to a stream in the PoPoolation2 sync format.
Definition:
sync_common.cpp:43
lib
genesis
population
formats
sync_common.hpp
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