A library for working with phylogenetic and population genetic data.
v0.32.0
ranks.hpp
Go to the documentation of this file.
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#ifndef GENESIS_TAXONOMY_FUNCTIONS_RANKS_H_
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#define GENESIS_TAXONOMY_FUNCTIONS_RANKS_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2017 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lucas.czech@h-its.org>
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Exelixis Lab, Heidelberg Institute for Theoretical Studies
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Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
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*/
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#include <string>
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#include <utility>
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namespace
genesis
{
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namespace
taxonomy {
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// =================================================================================================
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// Ranks
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// =================================================================================================
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std::string
rank_from_abbreviation
(
char
r );
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std::string
rank_to_abbreviation
( std::string
const
& rank );
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std::pair< std::string, std::string >
resolve_rank_abbreviation
( std::string
const
& entry );
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}
// namespace taxonomy
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}
// namespace genesis
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#endif // include guard
genesis::taxonomy::resolve_rank_abbreviation
std::pair< std::string, std::string > resolve_rank_abbreviation(std::string const &entry)
Resolve a combined rank and name entry of the form "k_Bacteria" into the full rank and the name,...
Definition:
ranks.cpp:121
genesis::taxonomy::rank_to_abbreviation
std::string rank_to_abbreviation(std::string const &rank)
Get the abbreviation of a taxonomic rank name.
Definition:
ranks.cpp:92
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::taxonomy::rank_from_abbreviation
std::string rank_from_abbreviation(char r)
Get the taxonomic rank name given its abbreviation.
Definition:
ranks.cpp:75
lib
genesis
taxonomy
functions
ranks.hpp
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