A toolkit for working with phylogenetic data.
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ranks.hpp
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1 #ifndef GENESIS_TAXONOMY_FUNCTIONS_RANKS_H_
2 #define GENESIS_TAXONOMY_FUNCTIONS_RANKS_H_
3 
4 /*
5  Genesis - A toolkit for working with phylogenetic data.
6  Copyright (C) 2014-2017 Lucas Czech
7 
8  This program is free software: you can redistribute it and/or modify
9  it under the terms of the GNU General Public License as published by
10  the Free Software Foundation, either version 3 of the License, or
11  (at your option) any later version.
12 
13  This program is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16  GNU General Public License for more details.
17 
18  You should have received a copy of the GNU General Public License
19  along with this program. If not, see <http://www.gnu.org/licenses/>.
20 
21  Contact:
22  Lucas Czech <lucas.czech@h-its.org>
23  Exelixis Lab, Heidelberg Institute for Theoretical Studies
24  Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
25 */
26 
34 #include <string>
35 #include <utility>
36 
37 namespace genesis {
38 namespace taxonomy {
39 
40 // =================================================================================================
41 // Ranks
42 // =================================================================================================
43 
44 std::string rank_from_abbreviation( char r );
45 std::string rank_to_abbreviation( std::string const& rank );
46 
47 std::pair< std::string, std::string > resolve_rank_abbreviation( std::string const& entry );
48 
49 } // namespace taxonomy
50 } // namespace genesis
51 
52 #endif // include guard
std::string rank_to_abbreviation(std::string const &rank)
Get the abbreviation of a taxonomic rank name.
Definition: ranks.cpp:92
std::pair< std::string, std::string > resolve_rank_abbreviation(std::string const &entry)
Resolve a combined rank and name entry of the form "k_Bacteria" into the full rank and the name...
Definition: ranks.cpp:121
std::string rank_from_abbreviation(char r)
Get the taxonomic rank name given its abbreviation.
Definition: ranks.cpp:75