A library for working with phylogenetic and population genetic data.
v0.32.0
functions/taxopath.hpp
Go to the documentation of this file.
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#ifndef GENESIS_TAXONOMY_FUNCTIONS_TAXOPATH_H_
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#define GENESIS_TAXONOMY_FUNCTIONS_TAXOPATH_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2017 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lucas.czech@h-its.org>
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Exelixis Lab, Heidelberg Institute for Theoretical Studies
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Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
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*/
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namespace
genesis
{
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namespace
taxonomy {
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// =================================================================================================
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// Forwad Declarations
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// =================================================================================================
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class
Taxon;
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class
Taxonomy;
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class
Taxopath;
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// =================================================================================================
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// Taxopath
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// =================================================================================================
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Taxon&
add_from_taxopath
(
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Taxonomy& taxonomy,
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Taxopath
const
& taxopath,
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bool
expect_parents =
false
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);
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Taxon
const
*
find_taxon_by_taxopath
( Taxonomy
const
& tax, Taxopath
const
& taxopath );
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Taxon*
find_taxon_by_taxopath
( Taxonomy& tax, Taxopath
const
& taxopath );
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}
// namespace taxonomy
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}
// namespace genesis
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#endif // include guard
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::taxonomy::add_from_taxopath
Taxon & add_from_taxopath(Taxonomy &taxonomy, Taxopath const &taxopath, bool expect_parents)
Add a Taxon to a Taxonomy, using the taxonomic elements of a Taxopath.
Definition:
taxopath.cpp:76
genesis::taxonomy::find_taxon_by_taxopath
Taxon const * find_taxon_by_taxopath(Taxonomy const &tax, Taxopath const &taxopath)
Find a Taxon in a Taxonomy, given its Taxopath.
Definition:
taxopath.cpp:120
lib
genesis
taxonomy
functions
taxopath.hpp
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