A library for working with phylogenetic and population genetic data.
v0.32.0
CommonTreeNewickReader Member List

This is the complete list of members for CommonTreeNewickReader, including all inherited members.

broker_to_tree(NewickBroker const &broker) constNewickReader
broker_to_tree_destructive(NewickBroker &broker) constNewickReader
CommonTreeNewickReader()CommonTreeNewickReaderinline
CommonTreeNewickReaderPlugin()=defaultCommonTreeNewickReaderPlugin
CommonTreeNewickReaderPlugin(CommonTreeNewickReaderPlugin const &)=defaultCommonTreeNewickReaderPlugin
CommonTreeNewickReaderPlugin(CommonTreeNewickReaderPlugin &&)=defaultCommonTreeNewickReaderPlugin
create_edge_data_function typedefNewickReader
create_edge_data_pluginNewickReader
create_node_data_function typedefNewickReader
create_node_data_pluginNewickReader
default_branch_length() constCommonTreeNewickReaderPlugininline
default_branch_length(double value)CommonTreeNewickReaderPlugininline
default_inner_name() constCommonTreeNewickReaderPlugininline
default_inner_name(std::string const &value)CommonTreeNewickReaderPlugininline
default_leaf_name() constCommonTreeNewickReaderPlugininline
default_leaf_name(std::string const &value)CommonTreeNewickReaderPlugininline
default_root_name() constCommonTreeNewickReaderPlugininline
default_root_name(std::string const &value)CommonTreeNewickReaderPlugininline
element_to_edge(NewickBrokerElement const &element, TreeEdge &edge) constCommonTreeNewickReaderPlugininline
element_to_edge_function typedefNewickReader
element_to_edge_pluginsNewickReader
element_to_node(NewickBrokerElement const &element, TreeNode &node) constCommonTreeNewickReaderPlugininline
element_to_node_function typedefNewickReader
element_to_node_pluginsNewickReader
enable_tags(bool value)NewickReader
enable_tags() constNewickReader
finish_reading_function typedefNewickReader
finish_reading_pluginsNewickReader
NewickReader()=defaultNewickReader
NewickReader(NewickReader const &)=defaultNewickReader
NewickReader(NewickReader &&)=defaultNewickReader
genesis::operator=(NewickReader const &)=defaultNewickReader
genesis::operator=(NewickReader &&)=defaultNewickReader
genesis::tree::CommonTreeNewickReaderPlugin::operator=(CommonTreeNewickReaderPlugin const &)=defaultCommonTreeNewickReaderPlugin
genesis::tree::CommonTreeNewickReaderPlugin::operator=(CommonTreeNewickReaderPlugin &&)=defaultCommonTreeNewickReaderPlugin
parse_multiple_trees(utils::InputStream &input_stream, TreeSet &tree_set, std::string const &default_name) constNewickReader
parse_named_tree(utils::InputStream &input_stream) constNewickReader
parse_single_tree(utils::InputStream &input_stream) constNewickReader
prepare_reading_function typedefNewickReader
prepare_reading_pluginsNewickReader
read(std::shared_ptr< utils::BaseInputSource > source) constNewickReader
read(std::shared_ptr< utils::BaseInputSource > source, TreeSet &target, std::string const &default_name="") constNewickReader
read(std::vector< std::shared_ptr< utils::BaseInputSource >> sources, TreeSet &target, std::string const &default_name="") constNewickReader
read(std::vector< std::shared_ptr< utils::BaseInputSource >> sources, std::string const &default_name="") constNewickReader
register_with(NewickReader &reader) constCommonTreeNewickReaderPlugininline
replace_name_underscores() constCommonTreeNewickReaderPlugininline
replace_name_underscores(bool value)CommonTreeNewickReaderPlugininline
self_type typedefCommonTreeNewickReaderPlugin
set_default_names(std::string const &value)CommonTreeNewickReaderPlugininline
stop_after_semicolon(bool value)NewickReader
stop_after_semicolon() constNewickReader
use_default_names() constCommonTreeNewickReaderPlugininline
use_default_names(bool value)CommonTreeNewickReaderPlugininline
~CommonTreeNewickReaderPlugin()=defaultCommonTreeNewickReaderPluginvirtual
~NewickReader()=defaultNewickReadervirtual