A library for working with phylogenetic and population genetic data.
v0.32.0
PhylipReader Member List

This is the complete list of members for PhylipReader, including all inherited members.

label_length(size_t value)PhylipReader
label_length() constPhylipReader
Mode enum namePhylipReader
mode(Mode value)PhylipReader
mode() constPhylipReader
operator=(PhylipReader const &)=defaultPhylipReader
operator=(PhylipReader &&)=defaultPhylipReader
parse_phylip_header(utils::InputStream &it) constPhylipReader
parse_phylip_interleaved(utils::InputStream &it, SequenceSet &sset) constPhylipReader
parse_phylip_label(utils::InputStream &it) constPhylipReader
parse_phylip_sequence_line(utils::InputStream &it) constPhylipReader
parse_phylip_sequential(utils::InputStream &it, SequenceSet &sset) constPhylipReader
PhylipReader()PhylipReader
PhylipReader(PhylipReader const &)=defaultPhylipReader
PhylipReader(PhylipReader &&)=defaultPhylipReader
read(std::shared_ptr< utils::BaseInputSource > source) constPhylipReader
read(std::shared_ptr< utils::BaseInputSource > source, SequenceSet &target) constPhylipReader
remove_digits(bool value)PhylipReader
remove_digits() constPhylipReader
site_casing(SiteCasing value)PhylipReader
site_casing() constPhylipReader
SiteCasing enum namePhylipReader
valid_char_lookup()PhylipReader
valid_chars(std::string const &chars)PhylipReader
valid_chars() constPhylipReader
~PhylipReader()=defaultPhylipReader