A library for working with phylogenetic and population genetic data.
v0.27.0
FastqReader Member List

This is the complete list of members for FastqReader, including all inherited members.

FastqReader()FastqReader
FastqReader(FastqReader const &)=defaultFastqReader
FastqReader(FastqReader &&)=defaultFastqReader
operator=(FastqReader const &)=defaultFastqReader
operator=(FastqReader &&)=defaultFastqReader
parse_document(utils::InputStream &input_stream, SequenceSet &sequence_set) constFastqReader
parse_label1_(utils::InputStream &input_stream, Sequence &sequence) constFastqReaderprotected
parse_label2_(utils::InputStream &input_stream, Sequence &sequence) constFastqReaderprotected
parse_quality_(utils::InputStream &input_stream, Sequence &sequence) constFastqReaderprotected
parse_sequence(utils::InputStream &input_stream, Sequence &sequence) constFastqReader
parse_sequence_(utils::InputStream &input_stream, Sequence &sequence) constFastqReaderprotected
parse_sites_(utils::InputStream &input_stream, Sequence &sequence) constFastqReaderprotected
quality_encoding(QualityEncoding encoding)FastqReader
quality_encoding()FastqReader
quality_string_function typedefFastqReader
quality_string_plugin(quality_string_function const &plugin)FastqReader
read(std::shared_ptr< utils::BaseInputSource > source) constFastqReader
read(std::shared_ptr< utils::BaseInputSource > source, SequenceSet &sequence_set) constFastqReader
site_casing(SiteCasing value)FastqReader
site_casing() constFastqReader
SiteCasing enum nameFastqReader
valid_char_lookup()FastqReader
valid_chars(std::string const &chars)FastqReader
valid_chars() constFastqReader
~FastqReader()=defaultFastqReader