A library for working with phylogenetic and population genetic data.
v0.32.0
SamVariantInputStream Member List

This is the complete list of members for SamVariantInputStream, including all inherited members.

begin() constSamVariantInputStreaminline
difference_type typedefSamVariantInputStream
end() constSamVariantInputStreaminline
flags_exclude_all() constSamVariantInputStreaminline
flags_exclude_all(uint32_t value)SamVariantInputStreaminline
flags_exclude_any() constSamVariantInputStreaminline
flags_exclude_any(uint32_t value)SamVariantInputStreaminline
flags_include_all() constSamVariantInputStreaminline
flags_include_all(uint32_t value)SamVariantInputStreaminline
flags_include_any() constSamVariantInputStreaminline
flags_include_any(uint32_t value)SamVariantInputStreaminline
input_file() constSamVariantInputStreaminline
input_file(std::string const &value)SamVariantInputStreaminline
inverse_rg_tag_filter() constSamVariantInputStreaminline
inverse_rg_tag_filter(bool value)SamVariantInputStreaminline
iterator_category typedefSamVariantInputStream
max_accumulation_depth() constSamVariantInputStreaminline
max_accumulation_depth(int value)SamVariantInputStreaminline
max_depth() constSamVariantInputStreaminline
max_depth(int value)SamVariantInputStreaminline
min_base_qual() constSamVariantInputStreaminline
min_base_qual(int value)SamVariantInputStreaminline
min_depth() constSamVariantInputStreaminline
min_depth(int value)SamVariantInputStreaminline
min_map_qual() constSamVariantInputStreaminline
min_map_qual(int value)SamVariantInputStreaminline
operator=(SamVariantInputStream const &)=defaultSamVariantInputStream
operator=(SamVariantInputStream &&)=defaultSamVariantInputStream
pointer typedefSamVariantInputStream
reference typedefSamVariantInputStream
region_filter(std::shared_ptr< GenomeLocusSet > region_filter)SamVariantInputStreaminline
rg_tag_filter() constSamVariantInputStreaminline
rg_tag_filter(std::unordered_set< std::string > const &value)SamVariantInputStreaminline
SamVariantInputStream()SamVariantInputStreaminline
SamVariantInputStream(std::string const &input_file)SamVariantInputStreaminlineexplicit
SamVariantInputStream(std::string const &input_file, std::unordered_set< std::string > const &rg_tag_filter, bool inverse_rg_tag_filter=false)SamVariantInputStream
SamVariantInputStream(SamVariantInputStream const &)=defaultSamVariantInputStream
SamVariantInputStream(SamVariantInputStream &&)=defaultSamVariantInputStream
self_type typedefSamVariantInputStream
split_by_rg() constSamVariantInputStreaminline
split_by_rg(bool value)SamVariantInputStreaminline
value_type typedefSamVariantInputStream
with_unaccounted_rg() constSamVariantInputStreaminline
with_unaccounted_rg(bool value)SamVariantInputStreaminline
~SamVariantInputStream()=defaultSamVariantInputStream