A library for working with phylogenetic and population genetic data.
v0.27.0
SamVariantInputIterator Member List

This is the complete list of members for SamVariantInputIterator, including all inherited members.

begin() constSamVariantInputIteratorinline
difference_type typedefSamVariantInputIterator
end() constSamVariantInputIteratorinline
flags_exclude_all() constSamVariantInputIteratorinline
flags_exclude_all(uint32_t value)SamVariantInputIteratorinline
flags_exclude_any() constSamVariantInputIteratorinline
flags_exclude_any(uint32_t value)SamVariantInputIteratorinline
flags_include_all() constSamVariantInputIteratorinline
flags_include_all(uint32_t value)SamVariantInputIteratorinline
flags_include_any() constSamVariantInputIteratorinline
flags_include_any(uint32_t value)SamVariantInputIteratorinline
input_file() constSamVariantInputIteratorinline
input_file(std::string const &value)SamVariantInputIteratorinline
inverse_rg_tag_filter() constSamVariantInputIteratorinline
inverse_rg_tag_filter(bool value)SamVariantInputIteratorinline
iterator_category typedefSamVariantInputIterator
max_accumulation_depth() constSamVariantInputIteratorinline
max_accumulation_depth(int value)SamVariantInputIteratorinline
max_depth() constSamVariantInputIteratorinline
max_depth(int value)SamVariantInputIteratorinline
min_base_qual() constSamVariantInputIteratorinline
min_base_qual(int value)SamVariantInputIteratorinline
min_depth() constSamVariantInputIteratorinline
min_depth(int value)SamVariantInputIteratorinline
min_map_qual() constSamVariantInputIteratorinline
min_map_qual(int value)SamVariantInputIteratorinline
operator=(SamVariantInputIterator const &)=defaultSamVariantInputIterator
operator=(SamVariantInputIterator &&)=defaultSamVariantInputIterator
pointer typedefSamVariantInputIterator
reference typedefSamVariantInputIterator
rg_tag_filter() constSamVariantInputIteratorinline
rg_tag_filter(std::unordered_set< std::string > const &value)SamVariantInputIteratorinline
SamVariantInputIterator()SamVariantInputIteratorinline
SamVariantInputIterator(std::string const &input_file)SamVariantInputIteratorinlineexplicit
SamVariantInputIterator(std::string const &input_file, std::unordered_set< std::string > const &rg_tag_filter, bool inverse_rg_tag_filter=false)SamVariantInputIterator
SamVariantInputIterator(SamVariantInputIterator const &)=defaultSamVariantInputIterator
SamVariantInputIterator(SamVariantInputIterator &&)=defaultSamVariantInputIterator
self_type typedefSamVariantInputIterator
split_by_rg() constSamVariantInputIteratorinline
split_by_rg(bool value)SamVariantInputIteratorinline
value_type typedefSamVariantInputIterator
with_unaccounted_rg() constSamVariantInputIteratorinline
with_unaccounted_rg(bool value)SamVariantInputIteratorinline
~SamVariantInputIterator()=defaultSamVariantInputIterator